rs38051672 SNP Detail

Summary

• ID
  rs38051672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75443174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAATTAT TAGATTACTA GCAATTGATA GCATATACAC
  CACATGGTTC GTTTTAAAGA GGGAAGATTA GAGCTACATT TTGCATCACT AGATAACAAA
  R
  CAAAACTTGG CATTGCTTTG TCGTAGCCAC ATTTCATGTC ACTACTGAAA GGAAGGGGTA
  ACTCCAAATG AGAGAAAAGA GTGCTTAAGA TATCTTCACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51558155	NES14679382	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38051672					SNP	G	G	G	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51558155	NES14679382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75443174 () rs orientation: forward

Symbol	Name	Function Class
Pdcd10	programmed cell death 10	Intron
Rr578345	regulatory region 578345	1489 bp distal