About   Help   FAQ
rs38050412 SNP Detail
Summary
  • ID
    rs38050412
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:103282354 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGATGATAT ATAAATAGAT
    AATGAAGATT GTAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT
    AGATAGATGA TAGGGAGTAA ATATTTTGAT GTCTTCCCCT CCATATATGA TTATGGAATT
    GGAATTTTCT GTGTGATCAA TACCATTTTA TAACAAAATA GGAAGGAATG TTTAATTGTT
    Y
    AATTCCCAAG TAGTGGCCAC TGGAATAGAA ATAAGGCATA CTTTCAAAGG AACCAGATAC
    ATTCAAGCAA GAAGTCTGCA GTAGCTCGGT AAGGTGGAGC GCACTACTGT GAAATGAGAC
    ACATAGCTTA GAAAGAGCAC AGGTGAGCAC AGGAGTGGTG TGATTTCATA GTGTGGTTCA
    GAAGTGTGGT TCAGTGTCTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
MOLF/EiJ
ss51396009 NES13717024 PERLEGEN MM_PANEL2 f SNP C C C C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
BTBR T<+> Itpr3/J
DBA/2J
KK/HlJ
MOLF/EiJ
rs38050412 SNP C C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51396009 NES13717024 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:103282354 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr635872 regulatory region 635872 1145 bp proximal
Rr635873 regulatory region 635873 1488 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory