rs38050412 SNP Detail

Summary

• ID
  rs38050412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:103282354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGATAT ATAAATAGAT
  AATGAAGATT GTAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT
  AGATAGATGA TAGGGAGTAA ATATTTTGAT GTCTTCCCCT CCATATATGA TTATGGAATT
  GGAATTTTCT GTGTGATCAA TACCATTTTA TAACAAAATA GGAAGGAATG TTTAATTGTT
  Y
  AATTCCCAAG TAGTGGCCAC TGGAATAGAA ATAAGGCATA CTTTCAAAGG AACCAGATAC
  ATTCAAGCAA GAAGTCTGCA GTAGCTCGGT AAGGTGGAGC GCACTACTGT GAAATGAGAC
  ACATAGCTTA GAAAGAGCAC AGGTGAGCAC AGGAGTGGTG TGATTTCATA GTGTGGTTCA
  GAAGTGTGGT TCAGTGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ
ss51396009	NES13717024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ
rs38050412					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51396009	NES13717024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:103282354 () rs orientation: forward

Symbol	Name	Function Class
Rr635872	regulatory region 635872	1145 bp proximal
Rr635873	regulatory region 635873	1488 bp proximal