rs38049969 SNP Detail

Summary

• ID
  rs38049969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84340805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGAGAT CTGCCTTTCT
  CTGCCTAACC AACACTGGGA TAACAGATGC ATGCCAGCAT GTTCAGCATT TGTATATGGG
  TTTTGGGGAT CAAATTCAGG TCTTTGTGTT TTTGAGGTAA GTGCTGTAAG GACTGTCTCT
  CTAGCTGATG ACCTGGTAAT AAACCTTACA TCTTCCCTGA ACTGCACTGT GGTTCTGATG
  R
  TAAGGAGGTG AAGGGGCCCT GGTTGATCAA GAGCCTACTA TGTGCCAGGT ATTGCTGAGG
  ATTCTTTTGG CTCAGGAATG CTGGCCTGGT GCTGAGGAGG GAAAAAAAGA CAGAGGAGAA
  TAACAGGAAA GCATGCCCCT TGCTGAGGAC TGCATGAAGG GATGCCTCAG TGGGCTCTGC
  TCTACCAAAT GTAAAATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51734149	NES14803910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38049969					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51734149	NES14803910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84340805 () rs orientation: forward

Symbol	Name	Function Class
Rr633039	regulatory region 633039	1269 bp proximal