rs38040727 SNP Detail

Summary

• ID
  rs38040727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87705068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAACTTA GTCTTTGGTT
  GGTTGGTTTT GGTGTCTCCA GACAGGGTTT CTCTGTGTTA CCCTGGCTGT CCTAAAACTC
  TATCTGTAGA CCAAGCCGGC CTTGAACATA GAGATCCACC TGCCTCCACC TCTCAAGAGC
  TGGGGTTGAA GGTGTGCAGC ACAACTGATT CCTAGTTAGT CTTTATTGGG ACGGGAAGAC
  R
  AGGATCAGCT CTCAGAAGGA CTTTTTGCCA GCTAGAACTG TTATATGAAG AGTTTTCTCT
  CTCAGCTCCC CTAAGAGGTT AAGGAGTTAG AAATGGAACG AACAGATGTT CTTCAACTCA
  CGGCTGTTAG TGAAACCGCG ATCCCAGTAA AGTCTGAGTT TAAACCAAAA TGAGACTGAG
  AATTGGAGGT TGCTTCTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575996	NES14669009	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38040727					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575996	NES14669009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87705068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	1631 bp distal
Cpgi13340	CpG island 13340	715 bp distal
Insrr	insulin receptor-related receptor	Intron
Rr579550	regulatory region 579550	1999 bp distal
Rr579551	regulatory region 579551	800 bp distal
Tssr29830	transcription start site region 29830	867 bp downstream
Tssr29831	transcription start site region 29831	779 bp downstream