rs38032552 SNP Detail

Summary

• ID
  rs38032552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108284853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTCCATG CTGTCAGGAT GTATTACCCA CCCACCCAAG
  CCAGGGGGGG GGCACACTGG AGTGACCCAC CTGCACGATT GTGTGTGCGT GCCTGTGTGC
  Y
  TGCTTGCCTG CGTGCCTGCT TGCCTGCTCT GGCAGGTGTT TGGGCAGATG AATTCTCCAT
  TCACTCCTAT CTGGTTCATG TATTTCTGTC TGCTGATGAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss51818038	NES14771871	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs38032552					SNP	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51818038	NES14771871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108284853 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636072	regulatory region 636072	1118 bp distal
Rr636073	regulatory region 636073	276 bp distal