rs38029175 SNP Detail

Summary

• ID
  rs38029175
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151908215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGTTAAC TGGACTACAG TCAGTTTATC AATACAACAC
  TTATGATACC CCACTAGATT AGATCATTGT CTGCATTGTG AAGGATAAAC TGAATAGAAG
  S
  CACACAGCCA CTGGCCCACA AGGTTTCCAC TGTAAATTCA TAAGGAACTT GCTATCATTC
  CTCTCACCAG ATAGTGGTAG AAAGTTAAAT CCAGGGCTGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ
ss51060566	NES13427429	PERLEGEN	MM_PANEL2	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ
rs38029175					SNP	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060566	NES13427429	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151908215 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			1438 bp upstream
Rr587487	regulatory region 587487			1103 bp distal
Rr587488	regulatory region 587488			619 bp distal
Rr587489	regulatory region 587489			1480 bp proximal
Rr587490	regulatory region 587490			1908 bp proximal