rs38027205 SNP Detail

Summary

• ID
  rs38027205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113357220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCCGAG ATAATGTAGC
  TGGTCATTGT AGCTGACCTT GTCCACTGAG AATGGACAGC TTTTACTTTT TCTCATTGTA
  GAACCGTCCT GATCCTGTAT CTGGTCAAAA CCAGTTTCTT TAGACAGTCT AGATTATTTT
  TAAGACTAGC TAGTTTTATA TGTTGCCCTC TGTTAGCCCT TGTGATTCTC GCCCAGTTGA
  R
  CTGTTTGAGG GTAGAAGAGA GATCACTTCT GAATTCCCAG CAAGTTCAGG ACATGGATTG
  ATACACTTGT CAGTGCAGTC AGCAGATAGG GATATGGCTC CTTCTAGATC ATCAGCCTTA
  CCTAGCTCTG GCACTGGTGA TGCTGTGTAA TTCTGTTGTG CATGCCAGGA TATTGCAGCA
  TGTCTTGCCT GTGTGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841921	NES14761531	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38027205					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841921	NES14761531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113357220 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	Intron
Cpgi17841	CpG island 17841	1435 bp distal
Rr636499	regulatory region 636499	1679 bp distal
Rr636500	regulatory region 636500	1353 bp distal
Rr636501	regulatory region 636501	671 bp distal
Rr636502	regulatory region 636502	1475 bp proximal
Tssr58200	transcription start site region 58200	454 bp upstream