rs38020015 SNP Detail

Summary

• ID
  rs38020015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152463024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAATGC CAGCTCTGCC
  TGTATCTCAG TGAGTTTTCT TTGCATCTCT TTTCTGTTGG TTTCAGAGTC TCAGATCATA
  CATTAGGTCT TTGGTCCACT TTGAGTGAAG ACTCATGTGA GGTTGAGGAG AACGGGAATG
  GCTCCCTTTT GTTTCCCACA TTTGGACGTC TGTTCCCCCA GGACTGCTGG CTGGCACTGC
  Y
  CTGTTTCCAG TGTTTTTGAC TCTTATGGCT GTGCCGGTGT GCATTTATTC CTGAACCCTC
  TGTGTGTTTT TGCACCAGTG CCAGGCCCTT TCCCTGTGGT TGTGGGGTGA GATCTGAGGT
  CAGGAATTGT GACCTCTAGC ATTGCTTATG CTCATCAGGG CTGCTTAAGC TACCCAGGGG
  CTTTTGGTTC CCACGACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51672674	NES14643778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38020015					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51672674	NES14643778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152463024 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40181	predicted gene, 40181			1724 bp upstream
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587594	regulatory region 587594			1164 bp distal
Rr587595	regulatory region 587595			within coordinates
Rr587596	regulatory region 587596			1170 bp proximal