rs38016881 SNP Detail

Summary

• ID
  rs38016881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112988983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTCCC CTCTCCATGA
  GAGCATGTTG GTAGGCCCCA CCTTATACTG GTCTTATGTC AATAATCACA GCTGAACAGT
  GAGAAATTGT TCTTTAAAAA AAAAAGCCTC TATGTATTGT CAGTCAATAA CAATCAAACA
  CAGATTGGAG AAAGGAAAAC AGAAATGAAT GGCTTAAATT GTGTCTATTA TCAAAAAGCC
  R
  TCTCAACAGA CTCCCAAGGT CAAATTCCTC TTTGTGTAAT GCAGTTCTGC ACTGTCACAT
  ATCTCACAAA AGTGGGTCAC CAGCTACAGC CAAAAGCTGG GTTGGTTGCT TTGTTGGTTG
  GTTGTTTTGG TTGTTGCATT GTTGTTGTTG GGTTTTGGGT TTTGGGGGGG GTGGTGGTGG
  TATTTCTTTT CTTTTTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51844074	NES14767491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38016881					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51844074	NES14767491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112988983 () rs orientation: forward

Symbol	Name	Function Class
Rr636433	regulatory region 636433	264 bp proximal