rs38009699 SNP Detail

Summary

• ID
  rs38009699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:36821607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGATTCC AAGTCATGCT
  GTTTATCCTT CTAGGGTAAC TAATTCTCTC CTGTCTCTCT CGTGTTGGCG AATATGGTAG
  TGTCAAGGAT TGGGCTAATG TTTCATGGTC GATGTAATAC AAGGTCACAA AAATTATTAG
  CTTTACTGCT ATACAATGCT CTCTTTTAAT AACACGTCAT TTTTCATGAT CTCACCAGCC
  Y
  AATTTAAAAA AGAATTCCAG GGAAGACACA AGAGACCAGA CGCTAGAGAA TCAGCTAGTC
  TGGCTGCTCT TTGCAGAACA TCCCCAGCAG GGTGTGTGAA GATTATTTTT TACAGGTACA
  TATTTTTGTG TTTGATAAAG TATGTGGGGC TAGGACTGTA CCATTTTCTC CCATACCTCG
  TGTTGGCTCA CTGCATGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51285883	NES13783586	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38009699					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51285883	NES13783586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36821607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6430604M11Rik	RIKEN cDNA 6430604M11 gene			686 bp upstream
Dgki	diacylglycerol kinase, iota			mRNA-UTR
				Noncoding-Transcript-Variant
Rr628573	regulatory region 628573			1795 bp distal
Rr628574	regulatory region 628574			1134 bp distal
Rr628575	regulatory region 628575			within coordinates
Rr628576	regulatory region 628576			610 bp proximal