rs38003677 SNP Detail

Summary

• ID
  rs38003677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGAGGG GAGGGGAGGG
  GAGGGGGTAG GGAGAAACAA TAATCAGAGA GAAAGGGAGG AGACCAAATG GAGCACACAC
  TTGCAAGACA GGTATGGGAC TAGTTTGTGG CATCTGACTC ATGGCCTGCC TTAGTTTACA
  GTATCTCTAC TCTCCCTCAG AAGGAGAATC CGTCCTCTCT TTTACTTCAC AGTAGAAGCA
  Y
  TTGCACGTAG AATTTCCTTT AAGTTAAGCA GTGTAGCAGA AAGGCCTTCT TCCTCAGGGC
  TGGGAGCTAC TAAGACCTGG GTGACTGCAG ATGCCTCCTC TCCGAGCCTC GACTTTTCCA
  TCTCTACAAT AAGAATATTG CTCTCTATTG GCTTTGGCAT TTCCTCAGGT GCAGTGCTCT
  TATTCAAATA GAAAATAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51859268	NES14882428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38003677					SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859268	NES14882428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645297 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	255 bp proximal
Rr637229	regulatory region 637229	826 bp proximal
Rr637230	regulatory region 637230	1648 bp proximal
Rr637231	regulatory region 637231	1924 bp proximal
Tssr58382	transcription start site region 58382	1975 bp downstream
Tssr58383	transcription start site region 58383	1049 bp upstream
Tssr58384	transcription start site region 58384	1087 bp upstream
Tssr62604	transcription start site region 62604	31 bp downstream
Tssr62605	transcription start site region 62605	65 bp downstream