rs37981744 SNP Detail

Summary

• ID
  rs37981744
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122070209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGATGA CAAGAGCAGC
  CAAAGTGGTG TCCCTCTTGA ATGTGATACC AAACCATGCA AGTCTGAACT CAGCATGACT
  CAGGATACTA CGGACAGTCC TGTCTTATTA TTTCTTAGCA GCGATGAAAG CCAGCAGTCT
  GACAGCAGTG AGAATGAAAG GGACACTTTG TGTTCTGTTG AAAACAATGG CCAAAAGGAG
  S
  CATCAGCTGA GGACCTGGAA GATGCCGCCT GTGACAGTGC ACTGTTTGTA ATTGACAAAA
  CTCCTGGATT GAGTGCTGAC AAAAACTTTT ACCTAGAAGA CAAGGCTCCG AGTGAAGTTG
  CTATTGAGGA AGAAAAAGAG GAAGAGGAGA AAGAGGAGGA AAATAGTGAA GAAGACTCAT
  CAGACAGTGA TGAGAATAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51020910	NES13905127	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37981744					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020910	NES13905127	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122070209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			1692 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584274	regulatory region 584274			1539 bp distal
Tssr31492	transcription start site region 31492			980 bp downstream