rs37981135 SNP Detail

Summary

• ID
  rs37981135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152776422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCAAGTG CAGTCGAATG
  GGGCCTCAGA GGGTCTGGAA AGAGCCCCAG CCACGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAAC AGCCATAGTT GTCCAAGTGG ATAAAACTGC ACAAGGAAGA
  AAAAAGGAAG GGAGGGAGAG GCTGGGAGTG GGAGAGAACA TAGATACAAG TATACATCCA
  Y
  AGAAAGGACA GATAGACGAG GACAGACAGA CACACATGCA TACAGATGCA CACACATCTA
  CATGCACACA CAAACACACA TAGGCACATA CATGTATATA CATGCACACA CATGTACATG
  CACACACAAA CACACATGCA TAGGCACATA CATGCGCACA CAAACACACA TGTATATACA
  TGTACACACA CATACAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51061752	NES13892868	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	C		C	C	C		T
ss136106007	ENSMUSSNP6069034	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss321029723	CHEV_3_152733749	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37981135					SNP	T	T	C	T	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51061752	NES13892868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152776422 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm40182	predicted gene, 40182	within coordinates
Rr587647	regulatory region 587647	349 bp proximal
Rr587648	regulatory region 587648	1516 bp proximal