rs37977269 SNP Detail

Summary

• ID
  rs37977269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83749601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAAGGG CACTGCCTAG
  ACCCCAGTCC CCATCTGTTA AGGACAGGTG CTCAGCTCCA ACTTCCTCAC TGCGGACAGC
  AGCAGCAACA GAATCAGAAG GTAGACTGGA ACATTCCGGC ATGTTATAAA AACAAGGTTT
  GCTTTGTGTT ACAAATAACC CATGATCAGG CCACTGCTCT CCCAAGAGCC AGGTTGGAGA
  Y
  GAGATCATGA GTAGGCAGAA CACACACCTC AGTGGAATGT GCTTCATACT GCACAGCAGG
  GAGAAGGCCT CAGATAGAGA CCAGGTACTC TCAGGGTTCC TTAGAAAGCT AGGATGGGGA
  AAGACACACC AACCTATCCT GCTGTGCTAT GATCCCATAC ACTCTTCCCT AGTGTGCACA
  CGTTCATGAC AAAGAGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51352293	NES13741335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37977269					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352293	NES13741335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83749601 () rs orientation: forward

Symbol	Name	Function Class
Rr632937	regulatory region 632937	1627 bp proximal
Tex261	testis expressed gene 261	Intron