rs37974116 SNP Detail

Summary

• ID
  rs37974116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85806084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTATCG AAGGATTCAA
  GTCATTAAAA GCAAACTGGA TTTTGCAGAC TCTGCAAGAC TTCAGTCACA CGAGGCTGCC
  CAACCCTACA CTGCTGTAGT GAAGGACTTG CAGGGACGAC CTGTACTCTC ACCAACCAGG
  TTAGCACCTG GAGGTTCGTT CTCAAAGATT TAATTTGCCA CAACAGCTCA CAGACAGATG
  R
  GACTACCTGA CTTAAAATTT GCCAGCTTTT AAAGGATGCA GTTTAGGAAA TGTTAAGAGA
  GGTGTGGGGT TTGGTGTGGG AAGAATGTGT GGAGTTACTC CTGGCCCTTG TAGGCCAACT
  TCCCAGCCCT CTGTATGTTC CCAGTCTGGA AACTCCCTGT GATTCAACAT TCTAGACTTT
  AGAATTCTGT CTCTAGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51034551	NES14384667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37974116					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034551	NES14384667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85806084 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	Intron
Gm40478	predicted gene, 40478	within coordinates
Rr470000	regulatory region 470000	1929 bp distal
Tssr114432	transcription start site region 114432	201 bp upstream
Tssr117101	transcription start site region 117101	142 bp downstream