rs37972617 SNP Detail

Summary

• ID
  rs37972617
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31105969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTACCT GCCCCAGTAA
  GTTTCAGAGT TCCACCACAC CTGACAAGTG TGGAGCCGAA CACAGAAATT ACTATCTCTA
  CTGGCAGAGC CCCTGGGCAA CCATATCCTT AGGGGGTAAG TTTAAGGTCA TTTTAGAAGC
  GTAAACCTTC GTCAAGACGT GTTTCAAAAC GTATGAGAAT ACCATATTAA TGACTAAGAG
  M
  TAATGTTACA TTTCAACCCA GATATGTATA TACTCACGTG TTATTTGCTG GTGTGTAAAT
  CTGTGAAGCC CTGCCCTGTG TACTAGCTTT TCTGCCTAGA ACAGGCCCCT TACATGAAAA
  CAGCCCCCCC CCCCAGTTAT TACTGCCAAG GGATGCAGAC TGTCCTCATT TGCAAAGCAC
  ATCCCGACAC TTATACAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259915	NES13793792	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37972617					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259915	NES13793792	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31105969 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627899	regulatory region 627899	27 bp proximal