rs37970244 SNP Detail

Summary

• ID
  rs37970244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100686118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATACTAA GAAGGGAAAG
  GAAGAAGATC GTGGCCTGTG GAATTCACCA AACTGGGTTC TAGTCCCAAG CCACTTTTGT
  CTCCTTTCCT TCATTTATAA AAATGATCAG ACTTAGCCCG GGGTTCCTGG AATCTTGTCC
  AGCTCTGATG ATGATGATCC TGTGATGATC AGGTCGAGTT CATCTGCAAG ATTGCAACCA
  Y
  GACTGCCACT TGCAAGACTA GCTCCTCATT CGCTGGCACT ACGCCACCTT ACTGATTGCT
  CAGACTCAGA CCCGCTCCTG AACTTATTCT TTCTCTTCTG AGCTAGCCTG TTTTCTCTTA
  AAATACAACT TCTTTCAGGG GAAAAAAATA TGCTACGTGT GTTTATTTTG TGGGTATATG
  TATGCGAGCT TGTGACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794128	NES14788273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37970244					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794128	NES14788273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100686118 () rs orientation: forward

Symbol	Name	Function Class
Gxylt2	glucoside xylosyltransferase 2	Intron
Rr635698	regulatory region 635698	985 bp distal
Rr635699	regulatory region 635699	270 bp proximal
Rr635700	regulatory region 635700	1067 bp proximal
Rr635701	regulatory region 635701	1177 bp proximal