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rs37957347 SNP Detail
Summary
  • ID
    rs37957347
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:85988042 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGCCATCC TGGTGACCAA
    CGCATCACTA CAGTGTGCCA TGTTCTTACC ACTGGCCCTG TGGATAGCTC CAGTACATGA
    GTACCGGAAG TCCATCTGTA AGTGTCCTCT CTGCGCATGC TCCCATTCCA GCCCTGCCCT
    TGCCCAGAAA CCCTCTTTTT TCCACTTCTC CCATTCTGTC CTTCCCTATC ATGCTCTCCC
    Y
    TGCTGCTGGC TGGTCTGGCC TAAGTGAGGA CAGAGGCGAT CTCTCTTCAC ATGAAAGCTG
    ACCCAGGAGA CACACCCCCC CCTCCCCTGC TGCCTCTCAC CACGCTGTTG GCAGGTGCAG
    AGTGTTAGGA GAGGTTGCTC TGTTGGTACA GGACTGGGAT GAGCATTCAA GGTCATCACT
    GTCCATTCTC CCAGATAAAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51757762 NES14802173 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37957347 SNP C C C C C C T C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51757762 NES14802173 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:85988042 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930553P18Rik RIKEN cDNA 4930553P18 gene 1707 bp downstream
Gm66378 predicted gene, 66378 116 bp upstream
Rr633312 regulatory region 633312 796 bp distal
Rr633313 regulatory region 633313 899 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory