rs37948521 SNP Detail

Summary

• ID
  rs37948521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108825063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCATTG CTATGGAGAG
  AATATGCTCA TTTTCTCTGT GGCGTTGCAG TTTCACCACT TTTTGCTGAA GTGTGCTCTG
  CCTTCTGAGA CTTGCTATCC TCCTGCCTCA CTCCTGGGTG TGATGATTAC AGGCATTCAC
  TACTGTGCCC AGCTCACTTC AGCTTTACAA AATACCGCAC TAAATTGAGT AGAAAGCTCT
  Y
  GGGTCCTGCC TTGATGCATT GATGCATCTC CACAGCCCCC GCCCCCTTTT TAAAAATTTT
  TTTCACAATG CTGTGTTCTC TCTGTACCAG AGAAGAGACT CTAAACAGAA TAAAACACGT
  GTGTGTCCCT ACGTGAGTCA AGGCCAGCAC AGACCAGTTC TGCTCCATGT CACTGTTCTG
  AAATCCAAAT GTGAAAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51808826	NES14771028	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37948521					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808826	NES14771028	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108825063 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636224	regulatory region 636224			492 bp distal