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rs37947770 SNP Detail
Summary
  • ID
    rs37947770
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:127742988 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTTAGATGG AGGAGAGAGA
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
    GAGAGAGATA CTCCTGATGT CTTGGTACTT CTCTGTCCCC TCAAGCAATG ACATCCGCTC
    TTGTAGACAT TCTGACATGT CCTGTTTCCA TTCAAACTAA GTGTTTCTCT GTTTATTGCT
    Y
    AGTTTGTCTT TCTCCTGTTG CTTGAACGGG ATATGTGCTC CTTCTTCGCT GATCCAGGCT
    GCTAAGCCTC TCAGTCTCAG ATCTCAGAAG CTACCTCTGC CTGATAGCAG GGAGGACCCT
    CTCTGTGTAC ACTGTCCTTA TGTCCAGCCA CTGCCTTCTG AAGATCTGGC TTCTGATTTT
    TCAGTCCCTG TAACTTGCCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss51616817 NES14661494 PERLEGEN MM_PANEL2 f SNP C C T C T C C T T T T T T C T
ss135875948 ENSMUSSNP5515552 ENSEMBL ENSEMBL_Sanger f SNP C T
ss320958552 CHEV_3_127652257 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs37947770 SNP C C T C T C C T T T T T T T C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51616817 NES14661494 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:127742988 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
9830132P13Rik RIKEN cDNA 9830132P13 gene within coordinates
Rr398010 regulatory region 398010 18 bp downstream
Rr584909 regulatory region 584909 719 bp distal
Rr584910 regulatory region 584910 within coordinates
Rr584911 regulatory region 584911 218 bp distal
Tssr31619 transcription start site region 31619 964 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory