rs37947770 SNP Detail

Summary

• ID
  rs37947770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGATGG AGGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGATA CTCCTGATGT CTTGGTACTT CTCTGTCCCC TCAAGCAATG ACATCCGCTC
  TTGTAGACAT TCTGACATGT CCTGTTTCCA TTCAAACTAA GTGTTTCTCT GTTTATTGCT
  Y
  AGTTTGTCTT TCTCCTGTTG CTTGAACGGG ATATGTGCTC CTTCTTCGCT GATCCAGGCT
  GCTAAGCCTC TCAGTCTCAG ATCTCAGAAG CTACCTCTGC CTGATAGCAG GGAGGACCCT
  CTCTGTGTAC ACTGTCCTTA TGTCCAGCCA CTGCCTTCTG AAGATCTGGC TTCTGATTTT
  TCAGTCCCTG TAACTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51616817	NES14661494	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	T	T	T		T	T	T	C		T
ss135875948	ENSMUSSNP5515552	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320958552	CHEV_3_127652257	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37947770					SNP	C	C	T	C	T	C	C	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616817	NES14661494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742988 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	18 bp downstream
Rr584909	regulatory region 584909	719 bp distal
Rr584910	regulatory region 584910	within coordinates
Rr584911	regulatory region 584911	218 bp distal
Tssr31619	transcription start site region 31619	964 bp upstream