rs37945614 SNP Detail

Summary

• ID
  rs37945614
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15183319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCCAGC CTGAGGCTGT
  CCGCTTTGTG TCTGCTTTAA TTGAAAATTA ATAGTTAGGG GGTTGCTATG GAAATGATAC
  CATGGCTTGC AGACAGCAAA CCCAGCTTTT TGCAAAGAGA CACTAGTGGT ATTGTTTGTC
  CTTGTTGACC TCAGAAGTTC AAAAGCCCGG AGGAGGAAAG GAGATGCAAA TATTTTACTT
  W
  AAAAAATGAA TTTACATATT TATAACATTA TTTTTGAATG TCAGAGATAT CAAGTTTTTT
  TTAAACTTTT GTTGGTAAAA ATGAATATAA AGCTTTTAAA TTTTATGTTA ATTGTTACTA
  CACAGCTTTC TAAGCTGATA AGGCTCTATT GCTAAGGATG TTATGTTATC ATTTTAGTGA
  ATGTAAACAG ATTTGTGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51242627	NES13801344	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37945614					SNP	T	T	T	T	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242627	NES13801344	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15183319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			12 bp distal
Rr626647	regulatory region 626647			837 bp proximal
Rr626648	regulatory region 626648			1696 bp proximal
Tssr54974	transcription start site region 54974			1250 bp upstream
Tssr54975	transcription start site region 54975			1311 bp upstream
Tssr54976	transcription start site region 54976			1411 bp upstream
Tssr54977	transcription start site region 54977			1434 bp upstream
Tssr54978	transcription start site region 54978			1895 bp upstream