rs37923964 SNP Detail

Summary

• ID
  rs37923964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113579249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATAA TTTTTTTTTA
  AGATTTAACT CAGGAAACTC AGGACCTCCA GAAGAGCAGT CAGTGCTCTT ACCTGCTGAA
  CCATCTCGCC AGCACCCCCC CCCTTTTTTT TTAAAGAGGT ATTCGTACTG TTGTGACAAT
  CTGTCCACAG TCCTCTGTGC AATCTGCCCA GATCTGGGAG ACATGTTTTG GGAGGCATGA
  Y
  TTGCTATTAG CACCACTGGG ATCCAGCAGA GCCAGAATCT CCTTACATTA CCCAATTGCA
  GGGGAATACC TGAGCCAGCC TTCCTAGGAA GAAACACACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACTGT ACAACAAAAC ACTAGCCCTG GTCCCAGAAA
  ATGGCAAGAG CATGTGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51840389	NES14766166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37923964					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840389	NES14766166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113579249 () rs orientation: forward

Symbol	Name	Function Class
Fancd2os	Fancd2 opposite strand	1573 bp upstream
Gm67049	predicted gene, 67049	within coordinates
Gm67050	predicted gene, 67050	1308 bp downstream
Rr379958	regulatory region 379958	909 bp downstream
Rr636546	regulatory region 636546	1584 bp distal
Rr636547	regulatory region 636547	1562 bp distal
Rr636548	regulatory region 636548	1208 bp distal
Rr636549	regulatory region 636549	1994 bp proximal
Tssr58229	transcription start site region 58229	1524 bp downstream
Tssr62459	transcription start site region 62459	1645 bp upstream
Tssr62460	transcription start site region 62460	1635 bp upstream