rs37923459 SNP Detail

Summary

• ID
  rs37923459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25188585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTGGCTT ACTGACTCAC ACTTAGGTGC TAGGGTCTTG
  AAGGAGACAG TGTGACAGAG GGTTGCATGG GACTGCAAAG CAGAGCAGCT TGGACATCGG
  Y
  TTTCCACACC AGACTGTAGG GGGTGTTATG TCCATCTGTG CCCCAGAACC TTCAGTTGGG
  CTGTCTGAGG TCAGGTACTT AAGTATGCAG TGAGTCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51082766	NES13879824	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C		C	T	T	C		C
ss321497026	CHEV_5_24489405	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37923459					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082766	NES13879824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25188585 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			623 bp distal
Rr608457	regulatory region 608457			within coordinates
Rr608458	regulatory region 608458			9 bp proximal
Rr608459	regulatory region 608459			146 bp proximal
Rr608460	regulatory region 608460			1731 bp proximal