rs37923036 SNP Detail

Summary

• ID
  rs37923036
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAAGTG GACACCTTTC
  CAGGGCTATT TTTGAAATTA CTATCATGGA GCTTGTGATT CTGGTTTTTC TCCCTGACTT
  ATCATTTTCT CCCTCTCCCC ATCCCCCCCC CACCCCCTTT CTGTTTTAAT AGCCAGAGTA
  AATGTAGGCG ATTTCCCCTT TCCTGGGGCT TCTAAAACTG TCTTCCCAAA TTGTTCCGAC
  M
  GTCATTTCAG GGCAGCTGAG TTCTCGGGCA TTCTGGAACA GCAAGCCTGG GGACTATGTC
  ACATGATTGT TTAATCTTGG GGAGTCCCAG GGGAGCACCA GGCACATGCT GTTACTGAAA
  CAGGACATAG GCTAAACAAG ACAGAGCTGA AAAATGGAAG AAAGAAGTCT CCATGACGTG
  TCCCTTCCCG TGGCTCACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50810552	NES14204853	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	C	C	C	C		C		C	C	C		C
ss146766627	ENSMUSSNP5913389	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C					C
ss323245273	CHEV_10_8482652	CHEVERUD	SCREENING_POP	f	SNP											A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37923036					SNP	A	A	A	A	A	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810552	NES14204853	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638618 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr384117	regulatory region 384117			within coordinates
Rr427375	regulatory region 427375			1404 bp distal
Rr427376	regulatory region 427376			within coordinates
Rr427377	regulatory region 427377			650 bp proximal
Sash1	SAM and SH3 domain containing 1			Intron
				mRNA-UTR
Tssr3133	transcription start site region 3133			458 bp upstream
Tssr96640	transcription start site region 96640			595 bp upstream
Tssr96641	transcription start site region 96641			571 bp upstream
Tssr96642	transcription start site region 96642			540 bp upstream
Tssr96643	transcription start site region 96643			484 bp upstream
Tssr96644	transcription start site region 96644			388 bp upstream
Tssr96645	transcription start site region 96645			238 bp upstream