rs37899933 SNP Detail

Summary

• ID
  rs37899933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15021841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTTATT TGTGTGTGTC
  AAGTGGTATG GACTAAGCCA TCTCCTTATT CCTTTAGATA ATTTTTTGTT GTTTTTAAAT
  TAACAAAAAG AAAACAACAT GAGTGTGTGT GTGTGTGTAT GTGTGTGTGT GCCTATGTGT
  ACTCTGTAGT GATTGTGTAT GGCTGAATTA CAGCATGCAG GTTGTGGGGA TTGGACTCAA
  Y
  GCCACATGCT TGAGGGCTAG CACTCTCTCT TACTGAGTTG TTTATTAGTT CCAGTTAATA
  ATAATAATAA CTAACAGCCT AGCTCATGGT ACAGATGGTT CATTATAAGT GGATTTCATT
  TTACTTTATT TTTATTGACA CTCACTTACA AATAAACTGT TGCTCCAAAA ACATTTGTCA
  GGGTATTGGG TTGCATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51214865	NES13797436	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37899933					SNP	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51214865	NES13797436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15021841 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit265	DNA segment, Chr 6, Massachusetts Institute of Technology 265			25 bp distal
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant