rs37899079 SNP Detail

Summary

• ID
  rs37899079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83435858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTCAGA ATAAGCCTTG
  GGGCACATCA GCTCAAGAGC AACCAAGCCA GGAGACATAA ATTGAGCCAC TCAAATGGAA
  GGAGCCAGGC CTGGCAAGAG AAACCCCTCG CACCCCCACC CCCACCCCCC TTGCAAGTCG
  TCCTAGTCAC TTCTCTCTCT GGAACTTCAT GTCTCAAGGT CTGTTGCTTT GACCCTGCTC
  Y
  CCTGTTTCAA GATTTCCTTC CCTGAGAAGT AAAAGCTTAC TCCTTCCTCC TAAGGTCCCA
  ACAACAAACC AAAGCACAGT TACGCCAAGG TTTAACCCTG GGAACCCATG ACAGTACTGG
  ACTCACTTAC AGCATATTGT TGAGGGGTTT CTGGGAGGAA CATGTGCGAC CCCAAAGCAG
  CAGCTGTACT TCACCTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51355063	NES13747273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37899079					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355063	NES13747273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83435858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17604	CpG island 17604	1444 bp distal
D6UmiJ2	DNA segment, Chr 6, University of Michigan Jones 2	1030 bp distal
Gm67132	predicted gene, 67132	1296 bp upstream
Rr632869	regulatory region 632869	1994 bp distal
Rr632870	regulatory region 632870	1851 bp distal
Rr632871	regulatory region 632871	814 bp distal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61660	transcription start site region 61660	1659 bp upstream
Tssr61661	transcription start site region 61661	1333 bp upstream
Tssr61662	transcription start site region 61662	229 bp downstream