rs37896627 SNP Detail

Summary

• ID
  rs37896627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130859935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTTTTAA AGTTGGCTTT
  AAGTATCTCT GGGTAGAAGA GAAATAGAAG GCAGCTAAAT AGGTAGGACA CCTTTACCGT
  GAACCCGCTT TATAAACCAC CATTCATTTT GCCTTGATAA TCTGGTCCTC CATTGTAACT
  GAATCCTAAT TCCTTTTAAC TTTCCTCATT CGGGTATGTT CTGCCTGCAG CCACTTCAGC
  R
  CCCCACGCCT TTCAAGCATG TTTAATGGGA AAGGTGAGGG TTTTCTACAG CTAATTACTT
  AATAGGTAAC AAAGCATAGC TCTGCCAGGG AGGGCTCCAG ATCCTTCCAG CGGCTGCGAG
  GCCACTCCCC TCCCAGCCCG GCCCCCTCCC CCGCCCTCGT ATGAGTGTCA GAAGGAGAGC
  CATATACTTT GTCTCTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51635549	NES14652437	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37896627					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635549	NES14652437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130859935 () rs orientation: forward

Symbol	Name	Function Class
Gm65588	predicted gene, 65588	1796 bp upstream
Rr585259	regulatory region 585259	802 bp distal
Rr585260	regulatory region 585260	1123 bp distal
Rr585261	regulatory region 585261	1060 bp distal