rs37891863 SNP Detail

Summary

• ID
  rs37891863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77386610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCAATAG CCCCCCCCCA
  AAGTTGAATA TCGTGTCCTT CTGCTATACA TCATGGAGGT GAATGGCAGA GCCTAAAATC
  TAGCACTAGT GGAAGCATAG GTCCTTCCTA GGTGCCCATA CACCAGTTCC TCGGGGTTCT
  GCTTGTGCTC CGGCTGGCTT AGCAGCTAGA GTGGTGACTG ATGGTAGCTT CTTTACCTGG
  R
  ATTAACCATC ACAATTGTCA GTATTCTCTT CTTGTATTTC AAAGGCTTTG GCTGGTTCCC
  TGCTAAGCCT GTCACAAGCT CATAGATCTA ACACCAAGCG AAGCCCAGCC TGAGCCAGGA
  CTGATGCTCT GTCAGCCCAG ACGTGTCCTG AACGTGTCCT GGAAGGCTTG TCTGACAAGC
  TGTCCCCTCT CTCCAGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50884837	NES14161845	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37891863					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884837	NES14161845	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77386610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94242	transcription start site region 94242			1126 bp downstream
Tssr94243	transcription start site region 94243			269 bp downstream
Tssr94244	transcription start site region 94244			109 bp upstream