rs37889999 SNP Detail

Summary

• ID
  rs37889999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72591999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTTGCT TTGTGCCCAC
  ACATTGTTTC AACAACTTTT CTCTAATTTA CTGCTCTCAA CATGGACATT TAGATGTAAA
  TGAAGAATGT ACACTCTCCA TTCTTTATGC CCAAAGGCTA TCACAAATTG AACTCTTCAA
  TAAGTCAAGT TACTGAAATT GTCTTCTAAA TCTCATGGCT CAGTAGGAAA TACAATAATT
  Y
  TGTCATATAG AGTTGTTTCT AAAGTTGTTT CATGGGTAAC ACTTTAACCC CAAAGATGTG
  TACATTTGTG CAATTTCAAC TCTTGTTGGT TGGCTTTCTA CTTTTGGTGT TAGTAACTAT
  GTAACTGAAA ACATTCTTCC TGCCTCCAGA TGGAAGATGG TTGGTATAGA AGCTAGAAAT
  GGTAAACTAT CTTAAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51695136	NES14819717	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37889999					SNP	T	T	T	T	T	T	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695136	NES14819717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72591999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1122 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1757 bp upstream
Rr399708	regulatory region 399708	1626 bp upstream
Rr632243	regulatory region 632243	192 bp proximal
Rr632244	regulatory region 632244	1267 bp proximal
Rr632245	regulatory region 632245	1720 bp proximal
Rr632246	regulatory region 632246	1812 bp proximal
Rr632247	regulatory region 632247	1974 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	1839 bp upstream
Tssr61478	transcription start site region 61478	1709 bp downstream