rs37885880 SNP Detail

Summary

• ID
  rs37885880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65947195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTACCTTG ATTTATGCAC
  AATCACACAT ATTTTCTTAC ATTAATCCCC CTCCCCTAGT GAGCTTTTTC TCTGGTCTTG
  GGCAGGTGGG AGTGTCTTGG GCTGGGAGAA AGCAAGTGAC CCGTGCTCAG TTCAGACACT
  CTCATTATCT ACAGCTGGAC TTTCGGAGCC CAAGCAATGA TCTCTCTCTC AAAACCCTTA
  Y
  TCATAAATAG CCATTTTAGT CTTTAGTATG TTATGATGGT TAAGAATCTA TTTGTAACTC
  ATGGCTAGGA GTGTGCTTCT TTGTCCTTGC TACATCAGAA GCATATTAGA CACAGAGAAG
  CCCTGGGTCA AGGATGTCTG AGAGGAGGCT TTTTCAATCC CTCAAAAATT ATCTGGTTTA
  CAAGGATAAG TTGGAGCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51539465	NES14688481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37885880					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539465	NES14688481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65947195 () rs orientation: forward

Symbol	Name	Function Class
Rr577786	regulatory region 577786	1036 bp proximal