rs37869309 SNP Detail

Summary

• ID
  rs37869309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85274107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCCTT GCTCTCCCAC
  ACTATTATTT TTCTTCACTG TTTTGTCTGT TGGTGGGCGG GGTGTCCTAT GAGGAAAGAC
  ACCCACGCAG CCTCATCCTT GCCCTGTCCT GGAGTGATGG AAAGGAGGAG AGACAAGGAA
  ACCTGAGAGA GGCAGATAAA CTTCAGTATA TCTGCACACA ACAGACCTTG GTTCAGTCCC
  Y
  GGCACTTAGA GAGAGAAGGA GGGAACCGGA ATGTCAATTT ACAATGTCTA CCATGTGGGA
  CTCAGGAAAT GCCACTCTAG AGCAAGTCCT GCCATGCAAC AGTCAACACC TGAAATTGGA
  TCTCCAACAC CTGTGTAAAA AAGCCAGATG TGACAGTGTA CACCTGCGAC CCCAGTGATG
  TGAGGGACAG AGACTAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51356111	NES13743883	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37869309					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356111	NES13743883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85274107 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr633169	regulatory region 633169			731 bp distal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant
Tssr57413	transcription start site region 57413			1365 bp upstream