rs37862902 SNP Detail

Summary

• ID
  rs37862902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99376177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACATTT GCGCTTACTT
  GTCATAGTGC TTAGCCAAAG AGCCAGAATC TTGAAGACAC CGGCATTCAG CTGAGAGAAC
  TAAATTATAT GGCGAGGGAT CAGAAATGGG GTCGCTTAGG CTAATTCAGA AGGCCTGTGC
  CTCCACATGC GGTCAGTATT TTTGCCTGGG GTGGAAATGT TCACAATTCT ACTTTCATGT
  Y
  GAAGCAGACA CTAAGAGGGA GAACAGAGTG TTTAATAGAA AATCAGAGTG GAAAATATGC
  ACAGCGCCCA AGGAGCTGTC TGGTTGTCTC AATACAAATG ATTGGCCACA ATGATGATCC
  AGAGGCAAAG TCAACCAGCA GCAAGGGGCC TCACAGAGTC TGCTCCAGAC ACTCACAAGG
  TCTGGCCCCA CGCTATATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51779899	NES14783317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37862902					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51779899	NES14783317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99376177 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Gm20696	predicted gene 20696			Intron
Gm20705	predicted gene 20705			within coordinates