rs37854703 SNP Detail

Summary

• ID
  rs37854703
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135211447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGCTGC CACACAGAAT
  CAAGCCCACG GGCTGCAGTT TGCTAACATG GATAATCCAG GAAAGCTGGA TCCTATGAGT
  GTGGCAGTGA GTGTACTTAC TGCCTGTGTG GTCTCTACTC AGCCCCCAGC AGCGCTCACT
  TAGAAAGCGT AGTGAAAAGT AGGTTGGAAA TGCTTAAGGT CTCCAAGGAA TGGGAGTTTC
  K
  GCTGAACTTT GGGCAGTAGA GGGCAGGAGA TGTGCTGCCC CCTGGAGGCT ATCCGGGGTA
  GTGGAAGCAA AGAGCAAGAA CTGGGCCCTG GGAGAGAAAG GAAACGTGTC CCAGGGCGGT
  CAGATTTTAT TTACTGCCAG GACTTTGGAG GTTCTATGTT TGGCTTAAAA GAGGCAGCCA
  GAGTCTCTTG GAGACCGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51651995	NES14651437	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37854703					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51651995	NES14651437	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135211447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585726	regulatory region 585726			within coordinates
Rr585727	regulatory region 585727			9 bp proximal
Rr585728	regulatory region 585728			32 bp proximal