rs37852064 SNP Detail

Summary

• ID
  rs37852064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86846588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGACTG GATTCTCTGC
  TGCCTTTCTG TAGGTCGTTG GGCTTGAACT CTGGTCTTGG AAGCAAGATG CTTGGCAAGG
  AGTGTCTTAA TGACTGGGCC AGGAAATTTG TTTGTTTGTT TGTTTAAAGG CTTTGGGCAT
  TTGTTTTCTT ACTTCCTTAC ACTAACTTTC TGAATGTTAA ATTCCTGGCT CCAAAGATGG
  R
  CACGTTTTAG TTTTCAATTC AAGCTACAAG CCTTTCTCCA GGAAGGTTGG TCTGTAAGGA
  CGTCTGTCTT GTCTGCCATG GTTAGAAGAT TGGATGGATT TCCTTCCTTT TCCCTTCCAT
  ACTTATTTTT CTTTTCATTT GTTTCTTGTG TTGAAATTCT TATGTTCCTT GGCTCACATT
  CTTGTTAGGA TACTCATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51748771	NES14798587	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37852064					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51748771	NES14798587	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86846588 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Rr633547	regulatory region 633547			705 bp proximal
Tssr57515	transcription start site region 57515			1204 bp upstream