rs37848286 SNP Detail

Summary

• ID
  rs37848286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108072355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGGG TTCAATATAA
  TTCAAATCCA CTTTTCACAC ATACTACAAC CTAATCTCCC AAGAGGCAAG AGGTTTCACA
  GCTAAGAAGG TAAGAACAGA AACTTCGGGC TTATAATCCC AGGACTGATT TTGATCCAAC
  AAACTAAGTC CTCTGAGAGA ACACTCAGGA GAATGGATTT TGAACAGTCT CTTTAAAAAG
  Y
  GCTTCTAGTA CAACAAGTTG GGCCTGGTCC GGTGACCAAT CCTGCAGATC CTAAGATGGA
  ATCAAGGGAT GAGGTGTGGG GCTATGATGA GACTAAGTAG CATGCGAGGC CTCTCTGACT
  CTCAGACCAT GCTTGTTAAC TCTCAGAGGC ACATGAGGTC AGAGCGTGCC TGAATGAGCC
  AGATGTAGAA AAAGTCAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51821657	NES14764187	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	C	C	C		C	C	T	C		C
ss133494865	ENSMUSSNP4790585	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321891658	CHEV_6_108045388	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37848286					SNP	T	T	T	T	T	C	T	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821657	NES14764187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108072355 () rs orientation: forward

Symbol	Name	Function Class
Rr636032	regulatory region 636032	1586 bp distal
Rr636033	regulatory region 636033	94 bp proximal