rs37847090 SNP Detail

Summary

• ID
  rs37847090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22042424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATTCA CATGGTCCAA
  GTCGTCAGGC TCCTAACACA CACAGCATGC TCTGCTCGGG GCCTTCCCTA GCCTACACAC
  TTGCCTGGAA GGCAACAACT CCTTTTCAGT TCCTTGAGCT GTGGCTTTTC TTCCCCAAAT
  CTTCTCTCAT GTTCCTTTCC TCCAGGGAGG GTGGTTGTGA CATCTGCACA CAGAGACGCC
  R
  TGGGAGGCAA CAGCTTCGTC CGTTGGAGTT TAAAGTCTAA CGCAAACCCT GAGCCGTTAT
  CTCACTATCC ACTGTTACAT AAGGAAACAG TCTTGACTGA CACCCCTTTC TGTGGTCATG
  AGTTGTTTCC TCATTGCTCT TCCCTCAGCA GTCTCACCTT TAACCCAGGA AGTGAGGAGA
  ACATGTTTCT GCCATGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51434024	NES14435454	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37847090					SNP	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434024	NES14435454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22042424 () rs orientation: forward

Symbol	Name	Function Class
Rr367416	regulatory region 367416	223 bp downstream
Rr367417	regulatory region 367417	within coordinates
Rr574182	regulatory region 574182	858 bp distal
Rr574183	regulatory region 574183	within coordinates
Rr574184	regulatory region 574184	28 bp proximal
Tssr32754	transcription start site region 32754	423 bp upstream
Tssr32755	transcription start site region 32755	within coordinates
Tssr32756	transcription start site region 32756	32 bp downstream