rs37846675 SNP Detail

Summary

• ID
  rs37846675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72872738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTACAAG ATTTTGCTTC
  AACCTCCTGA CAAGGGTGCT AGCAGCATAG ACATGAACTT GAAGTGCTGT TTCTTGAACT
  TAAGTGCTGT CTTTTGACAG AGAAGTACAA CTAGGATGGC AGTGAATTCC TAGGTTCAAA
  GGATCCTCCT GTCTTACTCT AAGAGTGGCT ACAACTAATA TTAGGTGACA CCACACATGC
  Y
  TCCTTTTATT TTCCTTTGGT GCTGAAAAAT AAACTCAAAG CTTACGCTGC AGGTTAACCA
  CGTACTGCAA GGCCAGGGAT GCAGCTTGGC TGTAAAGTGC TTACCCAGCA TGTATGAAGC
  TCTGGGTTCA AGTCCAACAC TACATAAACC AGACATGGTG CTACGTGCCT GTTAGCTGGG
  AAGTTGAAGG AAGAAAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51691869	NES14821477	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	C	T	C		C	C	T	C		C
ss133287898	ENSMUSSNP6945591	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss321823131	CHEV_6_72845749	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37846675					SNP	T	T	C	C	T	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51691869	NES14821477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72872738 () rs orientation: forward

Symbol	Name	Function Class
D530018E20Rik	RIKEN cDNA D530018E20 gene	within coordinates
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632326	regulatory region 632326	397 bp distal