rs37845513 SNP Detail

Summary

• ID
  rs37845513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30753599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTAAGTG CTCTTACAGA
  GCCTATCTGG AGGAAGGAAG GCCACCATCC TGGTCTCCCT CCCTCCCTTT TTCTTTTCTT
  TTTCTTTTTT CCTGACAGAA TCTCACTGGC TGACTTCAAA CTCAGAAAGC TCCCCCTGCC
  TGTCTCCTGA GAGCTGGCAT TAAAGGTGTA CATCACCTCA CCCAGCTCAG CTTGCTTTTC
  R
  CTTTTTAGGT TAGAGCAGCC CTTAGCCCTG ATAACCCAGA AACAGCAATG GAACCAGACA
  ATTGCCCCCG ACCACAGCCC TACAACCCCG GAGTTCACCA GAGTCTCGTG GGTTGGGTAG
  GAAAGAGGCA AGAAGGACGT TTACAGAGAC TGATTCCTAG ATCCATCCAC AACCTGCACC
  TTCAGAGCCA CCACCTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51448716	NES14440148	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37845513					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51448716	NES14440148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30753599 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13042	CpG island 13042			1913 bp proximal
Lrrc31	leucine rich repeat containing 31			Intron
				Noncoding-Transcript-Variant
Rr574816	regulatory region 574816			370 bp proximal
Tssr32902	transcription start site region 32902			315 bp downstream
Tssr32903	transcription start site region 32903			405 bp downstream