rs37839965 SNP Detail

Summary

• ID
  rs37839965
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69808789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATTGGAGA AGTAATCACC TATTAAAGAT ACAAGTTTGA
  GTTTCCCCAT CAACGTTTAT ATCTAGAAAG GACAAGTCAA ACAACAGCTC TTCCTAGCAA
  S
  GGCCATGTAG GTTATTTAAG GATGAGTAGA CACAGTGTTC CTGACATGGA GGTACACAGA
  GGGCACAGAC TTTCTGTCTG GGAGCCGAGG TCCTTTGAAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50977468	NES13926336	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37839965					SNP	G	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977468	NES13926336	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69808789 () rs orientation: forward

Symbol	Name	Function Class
D3Mit277	DNA segment, Chr 3, Massachusetts Institute of Technology 277	1972 bp proximal
Rr578240	regulatory region 578240	501 bp proximal
Rr578241	regulatory region 578241	1441 bp proximal