rs37830369 SNP Detail

Summary

• ID
  rs37830369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113583479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGCTAT GCATTTGAGG
  CCAGCCTGGT CCTCAGAACA GCCACAGAAA TGAGCCATTT TCTAGGGCTC GAGAGATTGC
  TCAGCTGTTA AAAGCAGTTC CAAAGAACCC AGGTACAAAT CCCAGGACCC ACGTTGCAGT
  TCACAGTGGT CCATAGCTCT AGTCCCAGGG GATATGACAC ACACACATAA AGGGAGACTA
  Y
  CAGTGTAAAT AATAATACTA ATCCATTTTC TGTATGTAGA GTTCTTTCAG GCTGTTGAGA
  TGGCTTGGCA GGTAAAGGCC ACCAACCTGA ATACAATCCT CAGGGTCCAC AAGGTGAAAG
  GAGAGAACCA GCTGTCACAA GTTGTCTTCT GGCCCCACAT AGTGCATGCC CACACCCACC
  TTCAAATACA ATAAATAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51840373	NES14766119	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37830369					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840373	NES14766119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113583479 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	Intron
Cpgi17850	CpG island 17850	1161 bp distal
Gm44200	predicted gene, 44200	957 bp upstream
Rr636549	regulatory region 636549	1736 bp distal
Rr636550	regulatory region 636550	1991 bp distal
Rr636551	regulatory region 636551	1772 bp distal
Rr636552	regulatory region 636552	1223 bp distal
Tssr58230	transcription start site region 58230	1750 bp downstream