rs37830311 SNP Detail

Summary

• ID
  rs37830311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18620035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGGCA AGTCCTAGGA
  GGTTCCTTCA GCCAAAGATG GGGTGGGAAG GGAGGGAGGG GGCACGGACG CAAAGGTCAT
  GGTGAGTATT GCGGTCAAAC AGTATCCACA CAGAAGGTTC TGGGTGAGGG ACAGGCATAG
  ATCGACCCAG GTGTTAGTAG GCTCCCACTG GCTGGCCACA AAGGTCTGCT TAGATTGATC
  Y
  GTCACACCTG CTTTTCAGTG TCACAGGCCG GGGTGTCATA CCTGGGCCTG TTTGAACCCT
  ATGACTTCTA AGGCTGCGCT AAGAGCCAGT TGCCTGCAGA ATCGACTGGA AATGCCAGTG
  CCCATAAGAC TGCTCTCTCT GCCAAGCACC TGAGGGTCAG AAGCCATCCC ACCTGAGAGG
  GTTTTTGTTT CTGTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51883634	NES14909090	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37830311					SNP	T	C	C	C	T	T	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883634	NES14909090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18620035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			1420 bp distal
Tssr64752	transcription start site region 64752			1401 bp downstream