rs37823009 SNP Detail

Summary

• ID
  rs37823009
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66443222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTTGAT AGACAGTCAA
  ACTCAGTGGG TAAAAAGTAA ACTGAGCTCT CCAACAGAAC AGAGGTACCT TCAACGGCAC
  AATGTTTTTA TTTGCATAAT CACAATTATT TGTGTGAGCT TGAATGACTT CCAAATCTAT
  GCAACGCCTC TGAAAAAATC AGAGAATTAT CTGAATATCC TTGTCTACAC GCGCAATTTA
  K
  AAAGAGTGTA TTTTTCACTT AAAATATTTT CAAAATCACA CCAATTAGAA ACCATAAAGA
  AAGGAATGTA GACCAATAAA GGAAGGCAGC TTGACGGATG ATGTATCACT TTTAATCACA
  CGGCACATGC AGCTGCCAAG TGTGATTTTT TTTTTCTGTT GAAGAACACT TTACAAATCA
  TTTGACTTAT TTACAGATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968804	NES13934343	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37823009					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968804	NES13934343	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66443222 () rs orientation: forward

Symbol	Name	Function Class
Rr807	regulatory region 807	within coordinates
Rr577841	regulatory region 577841	68 bp proximal
Rr577842	regulatory region 577842	1190 bp proximal