rs37811509 SNP Detail

Summary

• ID
  rs37811509
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACTTCT CCTCCTTCGA
  GTCACTTCTG TTAGATACTT GGTCACAACA ATGAGAGGAA TAAATGGTAC TCTTTGAATC
  ATTTATCATC CTGGCCAACA TTTCCATCAG ACGTAAGCTA TTTTATGTTT AACTGTCCTC
  ACACGCTGGA ACCCAGGTCA TAGGAGCAAA AGAAAGACAT GGACACAGGA GCACATATTC
  W
  GGAGAAGGTT CTCTGTGAGA GAGGACGGGT GCCACACTTC TCAAGCAGCA GGCAGGGGAG
  TTCTTGAAGA AAGGGACAAT ATTTTACTTG TCAGTAAAAG AAACACAAAT CAACAGAAGC
  AAAAGCAATA CTTTATTGAT TTAGTAAATA AGACAATCTG AGTCTAGTCA TGGAGCTTGA
  GTCACTACCA CATCAAGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631374	NES14833148	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37811509					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631374	NES14833148	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562040 () rs orientation: forward

Symbol	Name	Function Class
Gm38798	predicted gene, 38798	1553 bp upstream
Rr629347	regulatory region 629347	1299 bp distal
Rr629348	regulatory region 629348	1398 bp distal
Tssr56046	transcription start site region 56046	111 bp upstream
Tssr56047	transcription start site region 56047	244 bp upstream
Tssr56048	transcription start site region 56048	854 bp upstream
Tssr56049	transcription start site region 56049	904 bp upstream
Tssr60620	transcription start site region 60620	634 bp downstream
Tssr60621	transcription start site region 60621	652 bp downstream
Tssr60622	transcription start site region 60622	698 bp downstream
Tssr60623	transcription start site region 60623	754 bp downstream
Tssr60624	transcription start site region 60624	796 bp downstream
Tssr60625	transcription start site region 60625	864 bp downstream
Tssr60626	transcription start site region 60626	879 bp downstream
Tssr60627	transcription start site region 60627	895 bp downstream
Tssr60628	transcription start site region 60628	1039 bp downstream
Tssr60629	transcription start site region 60629	1094 bp downstream
Tssr60630	transcription start site region 60630	1163 bp downstream
Tssr60631	transcription start site region 60631	1207 bp downstream
Tssr60632	transcription start site region 60632	1259 bp downstream
Tssr60633	transcription start site region 60633	1285 bp downstream
Tssr60634	transcription start site region 60634	1298 bp downstream
Tssr60635	transcription start site region 60635	1364 bp downstream
Tssr60636	transcription start site region 60636	1469 bp downstream
Tssr60637	transcription start site region 60637	1725 bp downstream
Tssr60638	transcription start site region 60638	1765 bp downstream
Tssr60639	transcription start site region 60639	1816 bp downstream