rs37803841 SNP Detail

Summary

• ID
  rs37803841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151950160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTGCT GCCAAGATGT
  TTTAAAGACA TAATAGTTCA TATATTCCTA CAACTGCCAG TCCAGTTATA AATACATATA
  TTTAACCCAC TAACTTTATA AAATAGCATA GGATTACTAT CCGTGGTTTG CACAGGAGGA
  ACCAGAGGGA GTGACAGAAA AGTAACCTAT CCAAAGCCAC AAGTCCAGCT TCAGGATATT
  Y
  CCAGTAAGAT TATAATGTTC CACATGTGTG AAAGTGCCAG AGTGAAATCC TTCACTTTAT
  ATGCTACAAG ACATTTGAAA TGTGAATAAT TAACAGACTG CTTTTTTGTA ATTTTGTAAC
  TTTATATGAA TAAATTTGAT TGTGACCATG GGCAAGCTAC TTACCTCTCT TGAGCCTCCC
  TGTGGCAATT TTATTCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060322	NES13426250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37803841					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060322	NES13426250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151950160 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nexn	nexilin			Intron
				Noncoding-Transcript-Variant
Rr587498	regulatory region 587498			813 bp proximal
Rr587499	regulatory region 587499			1161 bp proximal
Rr587500	regulatory region 587500			1327 bp proximal
Rr587501	regulatory region 587501			1619 bp proximal
Rr587502	regulatory region 587502			1918 bp proximal
Tssr36172	transcription start site region 36172			1704 bp upstream
Tssr36173	transcription start site region 36173			662 bp upstream
Tssr36174	transcription start site region 36174			625 bp upstream
Tssr36175	transcription start site region 36175			536 bp upstream
Tssr36176	transcription start site region 36176			519 bp upstream
Tssr36177	transcription start site region 36177			490 bp upstream
Tssr36178	transcription start site region 36178			445 bp upstream