rs37803272 SNP Detail

Summary

• ID
  rs37803272
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151951625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTGAA GGTCCCGAGT
  TCCAGCAACC ACATAGTGGC TCACAACCAT CCTTAACGAG ATCTGACGCC CTCTTCTGGA
  GTGTCTGAAG ACTACTACAG TGTACTTACA TATAATAAAT AAATCTTTTT TATGTTAAAG
  TGCTTTAAAT TGATTCTTCG GATAACTATT TTACAAACAT TAACATAATG TGGAAAGTTT
  W
  AACTTTTTGA CAAATTAGAT ATCAATATGC AAGAAAGTAT GTTAGGGGGC TGGAGAGATG
  GCACAGTGGA TAAAAGCACT GACTGTTCTT CCAAAGGTCA TGAGTTCAAT TTCCAGCAAC
  CACATGGTGG CTCACAACCA TCTGTAAAGA GATCTGATGC CCTCTTCTGG TGTGTCTGAA
  AACAGCTACA ATGCACTCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060318	NES13426199	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37803272					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060318	NES13426199	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151951625 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	339 bp distal
Rr587499	regulatory region 587499	283 bp distal
Rr587500	regulatory region 587500	117 bp distal
Rr587501	regulatory region 587501	154 bp proximal
Rr587502	regulatory region 587502	453 bp proximal
Tssr36176	transcription start site region 36176	1984 bp upstream
Tssr36177	transcription start site region 36177	1955 bp upstream
Tssr36178	transcription start site region 36178	1910 bp upstream
Tssr36179	transcription start site region 36179	1120 bp downstream
Tssr36180	transcription start site region 36180	1198 bp downstream
Tssr36181	transcription start site region 36181	1222 bp downstream
Tssr36182	transcription start site region 36182	1237 bp downstream
Tssr36183	transcription start site region 36183	1265 bp downstream
Tssr36184	transcription start site region 36184	1968 bp downstream
Tssr36185	transcription start site region 36185	1984 bp downstream