rs37801039 SNP Detail

Summary

• ID
  rs37801039
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135013217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGGGGG GAGGGAGGAA
  GACACCAAAC TGGAAGTCAG AAATAAAAAA TTAAATGGCT GATGGGAGGG AGCGTTACAG
  TAAAACAACA TAGCAAGAGG CTCACAGTGA CAGACACTGG CCCAAGGTTT CACTCCGCCA
  TTTGTCACCT GAAGGAAAGA ACCCTGCCTG TGAGAAGACA CTGAGAGTCC TGGAATTTGC
  K
  TCGGATTACA GAATTTAGGA GATTCAGGAA CAGTGAGAGA GCCTGCTGCT CTTAGCCTTG
  AGAGGTGGCC AGAGGCTGCT GGAAGCTGGG GCGCGTGGGC CAGGGTCTCC CTCTGGCTGA
  ATGAGCAGAG CCCTGAACTG AGAGTGTGCC CCGCCCTGCC CCTCCCTGCC CCGCCCCTCC
  CTACCCCGCC CCGCGCCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51033998	NES13903055	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37801039					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51033998	NES13903055	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135013217 () rs orientation: forward

Symbol	Name	Function Class
Gm46826	predicted gene, 46826	within coordinates
Rr585684	regulatory region 585684	within coordinates
Rr585685	regulatory region 585685	300 bp proximal
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	mRNA-UTR
Tssr31804	transcription start site region 31804	225 bp upstream
Tssr31805	transcription start site region 31805	255 bp upstream