rs37795070 SNP Detail

Summary

• ID
  rs37795070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99065136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCACC AGACACCCAT
  CTCCACTCTA CCTGCCCTTG TTTGCAAGCC AGTTCCGCAT GGCAGAGTTC GATGACATCC
  TCATACCCAG GAGGCCAATA CTGCTTTGAT CCAAGCAGCA GCTAGGATGC TCCTACTTCA
  TGGGACAGAG ACTCAGAAGC CCAGGCACAC TCGTCACTCT CTCCCTCTGT TCTTGCCTCT
  Y
  TGGTCACCTT GTGCCACCCA TTTACTCTGA GGACACGGAT TCAGACATTC CTGTCTCTCG
  GTCCCCAGGC CTTCTTCAAT CCAACAGGGG TGAGGGGACA AGCCATCTGT ATTTTGGTTT
  AACTACGTTA AAAAGATTTT CTTTTGAGAA GTAATTGCAA AAATCAGGTA GTCATCTCTC
  TCATCCTTCA TCAACAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss51783682	NES14788800	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs37795070					SNP	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51783682	NES14788800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99065136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635345	regulatory region 635345			329 bp distal
Tssr62271	transcription start site region 62271			631 bp upstream