rs37793823 SNP Detail

Summary

• ID
  rs37793823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83574743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTAGAA GATCAGATGG
  CTTTTGTAGT TCCTGAGAGA TTTATGCTAC ACTTGGTTAG TTTCAAGCCT ATAGGCATCT
  GTGCTATTCA TTCTCTAGGG TAACATTCCA ATTTTCTATA ACTTCCAAAG GTCTTCTATC
  TGTACTGTCA ATCTGGATGA TCCTCCTTTG TGTTTACAAT CTTTGCAAAA GTAAACAGAT
  R
  TTGGCCTGTT AACATATGGC TTTTCTATTT ACAATTTGCA TTTTCTATTA TTGACTTTTA
  ATGATGAGAG AATATTTATA ATTGTAAGTA TACATGGTTC TAAAATTGAC TAAAATATGA
  GCTATGTAAA TGTAAATATA ATGTTTGCTT TTGTACAAAA TGACTATATA CATTTGTGAA
  AGTAAATACT ATCAGCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51353421	NES13744283	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G		G	G	G	G		G
ss321844680	CHEV_6_83547755	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37793823					SNP	A	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353421	NES13744283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83574743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	1268 bp proximal
Rr632898	regulatory region 632898	294 bp proximal
Rr632899	regulatory region 632899	926 bp proximal
Rr632900	regulatory region 632900	1080 bp proximal
Rr632901	regulatory region 632901	1979 bp proximal