rs37790204 SNP Detail

Summary

• ID
  rs37790204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65535668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGATGC AGCTTATGAA
  CTTGACCCAC AAAGAAAAGT TCAGGTGTAA ACTAAAGCTC TGCCTTCTAG ATCAGCTTTG
  TTGTTTTCTC ATTCAGTGCT TGGGATCTAA CCCAGGGCCT TATACAAAAC CCGTGCATAC
  TAGGCACAAA CTTTAGCAAG GGAACCACAT CTCCAGCTCC AAGTTCACCT ACCTCCTAAT
  R
  AAAGGCAAGA GAAGAAGTAA TACCCCTGGC CTATTATTTA TCACATACGA GGAGCTTTTC
  CATGTACAAG GGCTAATTCT TTTTTTTTTT CCAGCTTTTT CAACCACTTT TTTAAATTAA
  AAAAAATTTT TTTATTTAGG TATTTTCTTC ATTTACATTT CAAATGCTAT CCCAAAAGTC
  CCCCATACGC CCCCCCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50965430	NES13945859	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A		G	G	A	G	G	A
ss135252733	ENSMUSSNP2426628	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37790204					SNP	A	A	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965430	NES13945859	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65535668 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	1922 bp distal
Rr577713	regulatory region 577713	777 bp distal
Rr577714	regulatory region 577714	1383 bp proximal