rs37789913 SNP Detail

Summary

• ID
  rs37789913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8580187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCCCCT CAGAGGAAGT
  CCACTGTCCT GATGAGCATG TGCCCCTCAG AGGAAGTTCC ACTGATGATG AGCATGTGCC
  CCTCAGAGGA AGTTCCACTG TCCTGACTTT TAAATCTGTG GCAATGGATT ACAGAATATT
  TCACTTCCAA ACTCATATGC ATAGGGATTT GATTCCTCTG AGGATATGTA TTCTGTGCCA
  Y
  CACTCTCTCT TAATTAGATT GTTTAAAATA TATTTATATT ACAGGACTCA ACAGAAGGCC
  TTTGAGGAAA ATGGTGGGAG AAATAAGCCT GGCTCTGTGA ATATGTGTGT GGGTGGGTGG
  GTCTGTGACT CAGTTAAGAA AAATAGGGGA CTTTCAGGAT AGCATTTGAA ATGTAAATGA
  AGAAAATATC CAGAAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51431696	NES14443125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37789913					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51431696	NES14443125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8580187 () rs orientation: forward

Symbol	Name	Function Class
Rr573294	regulatory region 573294	1165 bp distal
Rr573295	regulatory region 573295	1242 bp distal
Stmn2	stathmin-like 2	Intron